bam2fastq_test output

Filename	s_1_1_sequence.txt s_1_2_sequence.txt	s_1_1_extracted.txt s_1_2_extracted.txt
Read Group	original_1	extracted_1
Library	lib1	lib2
Sample	original	extracted
Flowcell	original	extracted
Lane	1	1
Date Sequenced	13 August 2010	13 August 2010
File Type	FASTQ	FASTQ
Quality Encoding	Phred+64	Phred+33
Run Conditions	Paired End - 72/72bp	Paired End - 72/72bp
Predicted Insert	131	131
# Reads	22,223,944	22,223,944
# bp	3,200,247,936	3,200,247,936
Quality/Cycle
Observed Qualities
Base/Cycle
Aligned Reads	16,536,771	16,536,771
% Reads Aligned	74.4%	74.4%
Aligned bp	2,381,295,024	2,381,295,024
% bp Aligned	74.4%	74.4%
Observed Insert Sizes

bam2fastq_test_hg18.bam

BAM Version: 1.0
Sort Order: unsorted

Program
ID	Version	Command Line
analyze_illumina	0.5.6	`/opt/HAIB/levylab/bin/analyze_illumina -o bam2fastq_test -p8 -ghg18 -foriginal -llib1 -soriginal s_1_1_sequence.txt -fextracted -llib2 -sextracted s_1_1_extracted.txt`

Comments
`RG original_1 aligner: Bowtie v0.12.5`
`RG original_1 command line: "bowtie -q --phred64-quals -I 0 -X 318 -p8 --best --sam --sam-RG ID:original_1 --sam-RG SM:original --sam-RG LB:lib1 --sam-RG DT:2010-08-13 --sam-RG PU:original.1 --sam-RG PI:131 --sam-RG CN:HudsonAlpha --sam-RG PL:illumina hg18 -1 s_1_1_sequence.txt -2 s_1_2_sequence.txt original_hg18_original_1.sam"`
`RG extracted_1 aligner: Bowtie v0.12.5`
`RG extracted_1 command line: "bowtie -q --phred33-quals -I 0 -X 318 -p8 --best --sam --sam-RG ID:extracted_1 --sam-RG SM:extracted --sam-RG LB:lib2 --sam-RG DT:2010-08-13 --sam-RG PU:extracted.1 --sam-RG PI:131 --sam-RG CN:HudsonAlpha --sam-RG PL:illumina hg18 -1 s_1_1_extracted.txt -2 s_1_2_extracted.txt extracted_hg18_extracted_1.sam"`

md5sum file (for automated checks)